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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs116988415 1 rs116988415 chr14:65292145 CHURC1 chr14:65381140-65411309:+ 0.33 5.15 3.16E-7 Daytime sleep phenotypes
BRCA cis rs428445 1 rs11699551 chr20:55087964 C20orf43 chr20:55043647-55093942:+ 0.16 4.47 8.59E-6 Refractive astigmatism
BRCA cis rs11088226 1 rs11701091 chr21:33920244 TCP10L chr21:33947152-33957845:- -0.27 -5.52 4.26E-8 Gastritis
BRCA cis rs11088226 1 rs11701627 chr21:33927794 TCP10L chr21:33947152-33957845:- -0.29 -6.04 2.14E-9 Gastritis
BRCA cis rs2076028 1 rs11704021 chr22:39074716 APOBEC3C chr22:39410265-39414823:+ -0.09 -3.43 0.000627 Resting heart rate
BRCA cis rs2076028 1 rs11704021 chr22:39074716 DDX17 chr22:38879445-38903665:- -0.1 -3.38 0.000764 Resting heart rate
BRCA cis rs2076028 1 rs11704021 chr22:39074716 JOSD1 chr22:39081549-39096459:- -0.13 -4.18 3.09E-5 Resting heart rate
BRCA cis rs2076028 1 rs11704021 chr22:39074716 TOMM22 chr22:39077954-39080763:+ -0.1 -3.39 0.000724 Resting heart rate
BRCA cis rs10935120 1 rs11706117 chr3:134212526 ANAPC13 chr3:134196547-134204865:- 0.42 13.61 5.22E-39 Height
BRCA cis rs10935120 1 rs11706117 chr3:134212526 CEP63 chr3:134204575-134293852:+ 0.15 4.06 5.33E-5 Height
BRCA cis rs3796352 1 rs11707780 chr3:53084326 NT5DC2 chr3:52558386-52569093:- 0.16 4.39 1.26E-5 Immune reponse to smallpox (secreted IL-2)
BRCA cis rs10935120 1 rs11708531 chr3:134224902 ANAPC13 chr3:134196547-134204865:- 0.43 14.46 2.02E-43 Height
BRCA cis rs10935120 1 rs11708531 chr3:134224902 CEP63 chr3:134204575-134293852:+ 0.15 4.2 2.89E-5 Height
BRCA cis rs9858542 1 rs11709525 chr3:49690496 AMT chr3:49454212-49460012:- 0.11 3.52 0.000444 Crohn's disease;Ulcerative colitis
BRCA cis rs11710077 1 rs11710077 chr3:38657899 SCN5A chr3:38589554-38691164:- 0.12 3.43 0.000634 QRS duration;QT interval